PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G127300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 493aa    MW: 54738.2 Da    PI: 4.9526
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G127300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.2e-35121032102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++++sws++ nsfvv++  ef+k++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++          eF+++ F kg+k
  Manes.09G127300.1.p  12 FLSKTYDMVDDPSTNSVVSWSSSDNSFVVWNVPEFQKDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------YEFANEGFLKGQK 92 
                          9********************999******************************************99.........78*********** PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i rkks
  Manes.09G127300.1.p  93 HLLKSISRKKS 103
                          *********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.4E-38696IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.39E-347101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-588101IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3012101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-191235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-195062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEAVTMNSVP PFLSKTYDMV DDPSTNSVVS WSSSDNSFVV WNVPEFQKDL LPKYFKHSNF  60
SSFVRQLNTY GFRKVDPDRY EFANEGFLKG QKHLLKSISR KKSLNGQSTQ PPQVQSSKVS  120
ACVEVGKFGL EEEVERLKRD KNVLMQELVR LRQQQQATDN QLQTVGQRVQ AMEQRQQQMM  180
SFLAKAMQSP GFLNQLVQQN NESNRLAAGG NKKRRLPRQE EENLAVKTGS NSPNGQIVKF  240
HSSMNEAAKA MLHQILKMNS SSRLEPSINN SAPFLIGNLP SSSALDSSNT SSRISELMLS  300
DVQASFLPVE SAFSASHPCH AVSEVQSPSC VVTDHVKTDF ISEMKMHNSG QDAILPNFAE  360
RQGIMSEISA GVPNTNFVDP ETGVGENTTL MPPVLDVAIP EETDAYSSNQ DTDILMDGIH  420
KLPGINDVFW EQFLAASPIT VDTDEINSSS LLSGMTREQE LQSWQENGQD NIQHINHLTE  480
QMELLTSEGQ MG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-26310120129Heat shock factor protein 1
5d5v_B4e-26310120129Heat shock factor protein 1
5d5v_D4e-26310120129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070226.10.0PREDICTED: heat stress transcription factor A-1b-like
SwissprotQ84T611e-157HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A067L5Z10.0A0A067L5Z1_JATCU; Uncharacterized protein
STRINGVIT_16s0039g01840.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-114heat shock factor 3